Statistics panel
Gene information || Statistics of duplicated genes in tomato genomes
Gene information
Species No. genes No. mRNA No. Tesorter genes No. InterproKeyword genes Final No.genes
S. lycopersicoides LA2951 32,295 32,295 385 3 31,907
S. habrochaites LA1777 32,386 32,386 804 5 31,577
S. habrochaites LA0407 33,567 33,929 493 20 33,054
S. pennellii LA0716 38,088 38,088 3,356 11 34,721
S. pennellii LA716a 44,965 44,965 12,862 34 32,069
S. chilense LA1969 34,375 34,375 629 1 33,745
S. corneliomulleri LA1331 31,692 31,692 595 3 31,094
S. peruvianum LA0446 31,664 31,664 604 4 31,056
S. neorickii LA2133 39,262 39,262 675 3 38,584
S. neorickii LA0247 32,831 32,831 618 4 32,209
S. chmielewskii LA1028 31,613 31,613 547 2 31,064
S. galapagense LA0436 32,772 32,772 547 3 32,222
S. galapagense LA0317 33,105 33,470 362 22 32,721
S. pimpinellifolium BGV006775 35,145 36,246 501 3 34,641
S. pimpinellifolium PAS014479 34,350 35,083 423 2 33,925
S. pimpinellifolium LA2093 35,948 36,675 437 1 35,510
S. pimpinellifolium LA2181 36,113 36,879 512 1 35,600
S. pimpinellifolium LA1269 34,602 35,360 554 1 34,047
S. pimpinellifolium Wva 700 35,398 36,385 484 3 34,911
S. pimpinellifolium LA0400 37,237 37,994 490 2 36,745
S. pimpinellifolium LA1242 36,378 37,158 570 1 35,807
S. pimpinellifolium LA2187 36,754 37,694 613 1 36,140
S. pimpinellifolium LA2656 35,305 36,456 485 1 34,819
S. pimpinellifolium LA1547 33,427 33,427 489 3 32,935
S. lycopersicum var. cerasiforme LA0292 36,124 36,955 613 1 35,510
S. lycopersicum var. cerasiforme LA1228 34,360 35,258 407 1 33,952
S. lycopersicum var. cerasiforme Cerise du sud ouest N 2 34,768 35,672 471 1 34,296
S. lycopersicum var. cerasiforme LA1286 36,394 37,254 506 2 35,886
S. lycopersicum var. cerasiforme Cerise Gold 34,614 35,608 494 1 34,119
S. lycopersicum var. cerasiforme Peacevine Cherry 36,453 37,305 535 1 35,917
S. lycopersicum var. cerasiforme Sugar Lump 35,174 36,207 486 0 34,688
S. lycopersicum var. cerasiforme LA1456 34,290 35,040 532 1 33,757
S. lycopersicum var. cerasiforme LA1464 32,941 32,941 447 4 32,490
S. lycopersicum var. cerasiforme BGV006865 34,292 35,197 462 1 33,829
S. lycopersicum var. cerasiforme BGV007931 34,200 34,990 494 2 33,704
S. lycopersicum var. cerasiforme BGV007989 34,333 35,283 482 1 33,850
S. lycopersicum var. lycopersicum vintage Brandywine 35,318 36,423 420 1 34,897
S. lycopersicum var. lycopersicum vintage LA0118 35,746 36,424 493 1 35,252
S. lycopersicum var. lycopersicum vintage PI303721 33,863 34,687 448 2 33,413
S. lycopersicum var. lycopersicum vintage PI169588 34,029 34,742 500 2 33,527
S. lycopersicum var. lycopersicum MicroTom 35,213 76,120 861 64 34,288
S. lycopersicum var. lycopersicum LA4345 Heinz1706 36,648 43,752 544 3 36,101
S. lycopersicum var. lycopersicum EA03083 36,227 36,980 488 1 35,738
S. lycopersicum var. lycopersicum Scatolone di bolsena 35,643 36,670 564 4 35,075
S. lycopersicum var. lycopersicum yoku improvement 34,597 35,661 427 1 34,169
S. lycopersicum var. lycopersicum LA0404 34,694 35,811 469 1 34,224
S. lycopersicum var. lycopersicum LA1706 36,347 37,228 488 2 35,857
S. lycopersicum var. lycopersicum LA4347 35,037 36,002 501 1 34,535
S. lycopersicum var. lycopersicum LA2706 35,887 36,554 469 2 35,416
S. lycopersicum var. lycopersicum LA3840 35,266 36,096 495 1 34,770
S. lycopersicum var. lycopersicum LA3475 M82 34,228 35,130 517 2 33,709
S. lycopersicum var. lycopersicum TS331 36,507 37,234 432 2 36,073
S. lycopersicum var. lycopersicum LA2009 36,574 37,245 486 1 36,087
S. lycopersicum var. lycopersicum Yellow Pear 35,864 36,569 415 1 35,448
S. lycopersicum var. lycopersicum PI203232 35,830 36,578 464 2 35,364
S. lycopersicum var. lycopersicum EA01020 34,694 35,640 421 1 34,272
S. lycopersicum var. lycopersicum LA2838A 36,165 37,013 552 1 35,612
S. lycopersicum var. lycopersicum fresh Fla.8924 34,784 35,928 510 1 34,273
S. lycopersicum var. lycopersicum fresh LA3242 33,997 34,762 529 1 33,467
S. lycopersicum var. lycopersicum fresh EA00371 34,687 35,644 477 2 34,208
S. lycopersicum var. lycopersicum fresh LYC1410 33,869 34,756 444 3 33,422

 

Statistics of duplicated genes in tomato genomes
Species Total genes No. of WGD genes Percentage (WGD/Total,%) No. of TD genes Percentage (TD/Total,%)
S. lycopersicoides LA2951 31,907 11,948 37.45 6,660 20.87
S. habrochaites LA1777 31,577 11,358 35.97 4,367 13.83
S. habrochaites LA0407 33,054 13,971 42.27 3,686 11.15
S. pennellii LA0716 34,721 10,450 30.1 5,227 15.05
S. pennellii LA716a 32,069 11,473 35.78 4,276 13.33
S. chilense LA1969 33,745 12,105 35.87 5,360 15.88
S. corneliomulleri LA1331 31,094 11,581 37.25 4,904 15.77
S. peruvianum LA0446 31,056 11,516 37.08 2,188 7.05
S. neorickii LA2133 38,584 11,566 29.98 5,935 15.38
S. neorickii LA0247 32,209 11,683 36.27 5,040 15.65
S. chmielewskii LA1028 31,064 11,500 37.02 4,925 15.85
S. galapagense LA0436 32,222 11,844 36.76 5,172 16.05
S. galapagense LA0317 32,721 13,751 42.02 3,456 10.56
S. pimpinellifolium BGV006775 34,641 11,264 32.52 2,432 7.02
S. pimpinellifolium PAS014479 33,925 11,234 33.11 1,565 4.61
S. pimpinellifolium LA2093 35,510 10,822 30.48 1,604 4.52
S. pimpinellifolium LA2181 35,600 10,830 30.42 1,569 4.41
S. pimpinellifolium LA1269 34,047 10,827 31.8 1,413 4.15
S. pimpinellifolium Wva 700 34,911 10,920 31.28 2,407 6.89
S. pimpinellifolium LA0400 36,745 10,879 29.61 1,856 5.05
S. pimpinellifolium LA1242 35,807 10,858 30.32 1,626 4.54
S. pimpinellifolium LA2187 36,140 10,861 30.05 1,940 5.37
S. pimpinellifolium LA2656 34,819 10,900 31.3 2,412 6.93
S. pimpinellifolium LA1547 32,935 11,719 35.58 2,360 7.17
S. lycopersicum var. cerasiforme LA0292 35,510 10,852 30.56 1,559 4.39
S. lycopersicum var. cerasiforme LA1228 33,952 10,994 32.38 2,376 7
S. lycopersicum var. cerasiforme Cerise du sud ouest N 2 34,296 11,007 32.09 2,317 6.76
S. lycopersicum var. cerasiforme LA1286 35,886 10,864 30.27 1,628 4.54
S. lycopersicum var. cerasiforme Cerise Gold 34,119 10,968 32.15 2,513 7.37
S. lycopersicum var. cerasiforme Peacevine Cherry 35,917 10,820 30.13 1,641 4.57
S. lycopersicum var. cerasiforme Sugar Lump 34,688 11,019 31.77 2,378 6.86
S. lycopersicum var. cerasiforme LA1456 33,757 10,845 32.13 1,307 3.87
S. lycopersicum var. cerasiforme LA1464 32,490 11,703 36.02 4,970 15.3
S. lycopersicum var. cerasiforme BGV006865 33,829 11,216 33.15 1,537 4.54
S. lycopersicum var. cerasiforme BGV007931 33,704 11,158 33.11 1,298 3.85
S. lycopersicum var. cerasiforme BGV007989 33,850 11,360 33.56 2,333 6.89
S. lycopersicum var. lycopersicum vintage Brandywine 34,897 11,329 32.46 2,392 6.85
S. lycopersicum var. lycopersicum vintage LA0118 35,252 11,162 31.66 1,515 4.3
S. lycopersicum var. lycopersicum vintage PI303721 33,413 11,171 33.43 1,256 3.76
S. lycopersicum var. lycopersicum vintage PI169588 33,527 11,155 33.27 1,309 3.9
S. lycopersicum var. lycopersicum MicroTom 34,288 13,031 38 3,762 10.97
S. lycopersicum var. lycopersicum LA4345 Heinz1706 36,101 10,918 30.24 4,095 11.34
S. lycopersicum var. lycopersicum EA03083 35,738 10,806 30.24 1,729 4.84
S. lycopersicum var. lycopersicum Scatolone di bolsena 35,075 10,928 31.16 2,425 6.91
S. lycopersicum var. lycopersicum yoku improvement 34,169 10,964 32.09 2,451 7.17
S. lycopersicum var. lycopersicum LA0404 34,224 10,922 31.91 2,367 6.92
S. lycopersicum var. lycopersicum LA1706 35,857 10,824 30.19 1,654 4.61
S. lycopersicum var. lycopersicumLA4347 34,535 10,911 31.59 2,289 6.63
S. lycopersicum var. lycopersicum LA2706 35,416 10,816 30.54 1,595 4.5
S. lycopersicum var. lycopersicum LA3840 34,770 10,995 31.62 2,482 7.14
S. lycopersicum var. lycopersicum LA3475 M82 33,709 10,809 32.07 1,357 4.03
S. lycopersicum var. lycopersicum TS331 36,073 10,920 30.27 1,769 4.9
S. lycopersicum var. lycopersicum LA2009 36,087 10,896 30.19 1,674 4.64
S. lycopersicum var. lycopersicum Yellow Pear 35,448 10,891 30.72 1,594 4.5
S. lycopersicum var. lycopersicum PI203232 35,364 10,849 30.68 1,716 4.85
S. lycopersicum var. lycopersicum EA01020 34,272 10,930 31.89 2,393 6.98
S. lycopersicum var. lycopersicum LA2838A 35,612 10,792 30.3 1,568 4.4
S. lycopersicum var. lycopersicum fresh Fla.8924 34,273 11,225 32.75 2,221 6.48
S. lycopersicum var. lycopersicum fresh LA3242 33,467 11,134 33.27 1,260 3.76
S. lycopersicum var. lycopersicum fresh EA00371 34,208 11,299 33.03 2,193 6.41
S. lycopersicum var. lycopersicum fresh LYC1410 33,422 11,116 33.26 1,296 3.88
tomatoPangenome is developed by Jingyin Yu in the Xianghu Laboratory, Hangzhou, 311231, P. R. China

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