MISAweb - a web for MIcroSAtellite identification tool

MISA allows the identification and localization of perfect microsatellites as well as compound microsatellites which are interrupted by a certain number of bases. According to the scripts downloaded from the website (http://pgrc.ipk-gatersleben.de/misa/) developed by Dr. Thomas Thiel (Thiel T, et al. 2003), we designed the MISAweb to identify microsatellite DNAs from a DNA sequence.

Note: MISAweb was firstly reported by Dr. Jingyin Yu in the PMDBase (Yu J. et al., Nucleic Acids Res. 2017).

 

Enter sequence below in FASTA format (query sequence less than 30kb):

Note: test sequence

Parameter: i. definition(unit_size,min_repeats): 1-10 2-6 3-5 4-5 5-5 6-5; ii. interruptions(max_difference_between_2_SSRs): 100.

 

  

 

 

Download previous MISAweb results

Please input the job ID:

Note: previous MISAweb results will be kept in the server for one week.