The LRR-RLKome of leucine-rich repeat receptor-like kinases in tomato clade

Characteristics of LRR-RLK gene family

  • The LRR-RLK receptors contain extracellular domains consisting of 1 to about 30 LRRs flanked by two cysteine pairs, a single-pass transmembrane domain (TM) and an intracellular erine/threonine protein kinase domain (KD)

  • Conserved domains: LRRs, TM, and KDs

    • LRR domains: LRR_1 (PF00560), LRR_2 (PF07723), LRR_3 (PF07725), LRR_4 (PF12799), LRR_5 (PF13306), LRR_6 (PF13516), and LRR_8 (PF13855).

    • TM motif: TMHMM , and here is the online webservice of prediction of transmembrane helices in proteins.

    • KD domain: Pkinase (PF00069) and Pkinase_Tyr (PF07714).

Browse LRR-RLKs by gene subfamilies
LRR-I LRR-II LRR-III LRR-IV LRR-V
LRR-VI-1 LRR-VI-2 LRR-VII LRR-VIII-1 LRR-VIII-2
LRR-IX LRR-Xa LRR-Xb LRR-XI LRR-XII
LRR-XIIIa LRR-XIIIb LRR-XIV LRR-XV Unclassified
     
Browse LRR-RLKs by tomato species
tomatoPangenome is developed by Jingyin Yu in the Xianghu Laboratory, Hangzhou, 311231, P. R. China

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