• Home: quick navigation, Useful Websites, Genome-sequenced Tomato Species, Welcome to tomatoPangenome, News, and Important Publications.
• Genome: browsing tomato genomes with tomato groups and taxonomy.
• Pangenome: browsing orthologous groups in tomato pangenomes and different tomato groups.
• GeneFamily: browsing the LRR-RLK gene family with LRR-RLK gene subfamilies and tomato groups.
• Tools: general search (query: genus, latin name, gene ID, InterPro ID, and GO ID), advanced search(local BLAST), and JBrowse (genome browse)
• Document: data statistics (data statistics of tomatoPangenome collected), and resources links (useful links).
• Community: manual (manual of accessing tomatoPangenome), and download (data files of tomatoPangenome).

☺User can browse tomato genomes with tomato groups including distant wild species, ancestral wild species, early domesticated species, modern domesticated species (vintage), and mordern cultivated species (fresh market).

☺User can browse tomato genomes with taxonomy.

☺User can browse genome information from basic information, genomic status, evaluation for gene prediction, and publication. Moreover, each tomato genome had four cross-links with tools in tomatoPangenome.

☺User can click the ratio and proportion in the pie chart to get the orthologous groups in different pan-gene sets.

☺User can click the red and blue bars in the UpSet chart to get the orthologous groups in different tomato groups.

☺This is an search page with two sections including basic and functional serach.  In basic search, users can search tomato species and genes, and in functional search users can search corresponding genes with specific InterPro and GO terms in tomatoPangenome.

☺ Gene page included gene basic information, gene JBrowse, and gene models. Gene model can directly link to mRNA page in tomatoPangenome.

☺ mRNA page included mRNA basic information, mRNA JBrowse, IPRscan annotation, Gene Ontology annotation, collinear gene pairs, and corresponding tandem array. In JBrowse function, user can get the DNA and coding sequences of target gene model.